SuperDuper! always saves and re-loads your "default settings" so that it's easy for most people to back up: you just start SD!, verify your settings, and click "Start Copying".
Without that feature, you'd have to re-choose all your options each time you wanted to back up, which can be quite a pain.
There's no preference that controls this at the moment... it's just how the program works.
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--Dave Nanian
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