Yeah, we've got a bunch of bugs reported against this behavior.
We don't copy the .Spotlight stuff in v2.x (and you can exclude it with a copy script), but unfortunately ignoring it means it's deleted from the destination. The disable_spotlight stuff recreates the folder as expected, though, and *seems* to turn the indexing off... but, again, there are definitely issues here that Apple needs to work through...
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--Dave Nanian
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