It's possible that they'll cause the destination to fill, and -- since FileMaker doesn't try to keep its data flushed -- they might be unusable.
I'd suggest using the before/after copy "shell script" call-outs to either stop the server during the backup, or to export the databases and then use a copy script that doesn't copy the databases directly (instead, it backs up the exported versions).
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--Dave Nanian
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