[dnanian]

Some -- usually very few -- applications don't like running if they're aliased: your three entries sound like three of them.

What I'd suggest is to create a new Safety Clone script, include the old one, and then just tell SuperDuper! to copy the three folders that aren't working when aliased. There's a description of this in the User's Guide.

Audio Units should *certainly* have been copied: we copy everything in /Library except for some Sync Services stuff, which is shared...