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I too just ran into this issue ("SuperDuper! cannot find target volume "(null)" appearing, and the inability to dismiss the dialogue box, even though the menubar was still working in SD). For me too, deleting the settings folder, removed that message, but the buttons in SD were still greyed out.
Quitting ExpanDrive fixed this.
But, I have been running ExpanDrive regularly (though not constantly) for at least half a year and SD worked fine all the time. There has been no new version of ExpanDrive (nor SD, nor the OS) lately. So, this is definitely an issue triggered only by a certain set of circumstances. But is also definitely related to something ExpanDrive does or cause.
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