OK, that's different. This ONLY happens when you repair permissions on Sandbox, whether from Macintosh HD or from Sandbox?
If that's the case, I'd recreate the Sandbox and check it with Repair Permissions. If it's fine, reinstall Tiger on it. Then, immediately -- without updating -- check it with Repair Permissions.
Finally, use Software Update (don't do it yourself) to update Sandbox and check again.
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--Dave Nanian
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