You are right, the same lines appear in system log when subsequently shutdown occurs as expected.
I noticed something else:
Until now, I solved the situation by dismissing the error message, quitting SD! and then shutting down the computer.
This time I dismissed the error message, chose Shut Down... from the Apple menu and clicked Shut Down in the dialog. After about one minute again the error message appeared that SD! could not be quit.
Nothing at all in console and system log.
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